LBA-ECO CD-04 叶片的光合作用和呼吸作用,塔帕若斯国家森林:2000-2006

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【摘要】 ​LBA-ECO CD-04 Leaf Photosynthesis and Respiration, Tapajos National Forest: 2000-2006简介本数据集报告了以下测量结果:(1) 叶片光合作用响应曲线,该曲线反映了温度、叶龄、变暖、辐射和昼夜节律的影响;(2) 叶片在 30 和 37 摄氏度下的光呼吸速率。测量于 2000 年 6 月至 2006 年 2 月期...

LBA-ECO CD-04 Leaf Photosynthesis and Respiration, Tapajos National Forest: 2000-2006

简介

本数据集报告了以下测量结果:(1) 叶片光合作用响应曲线,该曲线反映了温度、叶龄、变暖、辐射和昼夜节律的影响;(2) 叶片在 30 和 37 摄氏度下的光呼吸速率。测量于 2000 年 6 月至 2006 年 2 月期间在巴西帕拉州塔帕若斯国家森林的 83 公里伐木森林塔、67 公里原始森林塔和塞卡弗洛雷斯塔的对照点进行。该数据集包含 7 个逗号分隔的 ASCII 数据文件。


摘要

Column Heading Units/format Description
1 Set Unique identifier given to each set of measurements
2 Obs Observation number identifies consecutive measurements within a set
3 Common_name Common name, or not provided
4 Scientific_name Scientific name in the format Genus species or not provided
5 Family Scientific family or not provided
6 Time seconds Seconds since start of set, actual measurements started at 20 minutes to allow for equilibration
7 Photo umol CO2 m-2 s-1 Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
8 Cond mol H2O m-2 s-1 Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
9 Ci umol CO2 mol air-1 Intercellular CO2 concentration reported as micromoles of CO2 per mol of air (umol CO2 mol air-1)
10 VpdL kPa Vapor pressure deficit of the leaf reported in kilopascals (kPa)
11 T_air degrees C Air temperature in the chamber in degrees Celsius (degrees C)
12 T_leaf degrees C Leaf temperature in degrees Celsius (degrees C)
13 CO2_ref ppm Atmospheric CO2 concentration in the reference chamber reported in parts per million (ppm)
14 H2O_ref mmol H2O mol air-1 Atmospheric water vapor concentration in the reference chamber reported in millimoles of water per mole of air (mmol H2O mol air-1)
15 RH_ref % Relative humidity in the reference chamber reported in percentage (%)
16 Flow umol s-1 Flow rate in chamber reported in micromoles of air per second (umol s-1)
17 PARi umol m-2 s-1 Photosynthetically active radiation (PAR) flux in the chamber reported as micromoles of photons per meter squared per second (umol m-2 s-1): all wavelengths between 400 and 700 nm included in this measurement
18 Hour digital hours Local time using a 24 hour clock and presented in a digital hour format. When a continuous sampling set included samples on two calender days the time values on day 2 are time +24 for ease of x axis graphing ie 25.0 = 1 am on day 2
19 Calibration Observation from internal calibration mechanism
Missing data values are represented as -9999


File 2: CD04_Photosynthesis_Temp_Curves_Santarem.csv

We made leaf-level measurements at two field sites, working off a 45 m tall scaffold tower at km 67 and a 30 m tall tower at km 83 (Doughty and Goulden, 2008). The specific site for each set of measurements was not provided.

Column  Heading Units/format Description
1 Set Unique identifier given to each set of measurements
2 Obs Observation number within a set
3 Year YYYY Sampling date: year
4 Month MM Sampling date: month (1-12)
5 Day DD Day of month (1-31)
6 Time HH:MM:SS Sampling time in local time (GMT -4) and 24 hour clock
7 Common_name common name
8 Scientific_name Scientific name in the format Genus species
9 Family Scientific family
10 Photo umol CO2 m-2 s-1 Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
11 Cond mol H2O m-2 s-1 Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
12 Ci umol CO2 mol air-1 Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
13 VpdL kPa Vapor pressure deficit of the leaf reported in kilopascals (kPa)
14 T_air degrees C Air temperature in the chamber in degrees Celsius (degrees C)
15 T_leaf degrees C Leaf temperature in degrees Celsius (degrees C)
16 CO2_ref ppm Atmospheric CO2 concentration in the reference chamber reported in parts per million (ppm)
17 H2O_ref mmol H2O mol air-1 Atmospheric water vapor concentration in the reference chamber reported in millimoles of water per mole of air (mmol H2O mol air-1)
18 RH_ref % Relative humidity in the reference chamber reported in percentage (%)
19 Flow umol s-1 Flow rate in chamber reported in micromoles of air per second (umol s-1)
20 PARi umol s-1 Photosynthetically active radiation (PAR) flux in the chamber reported as micromoles of photons per meter squared per second (umol m-2 s-1): all wavelengths between 400 and 700 nm included in this measurement
Missing data values are represented as -9999


File 3: CD04_Photosynthesis_Warming_30_Santarem.csv

Leaf-level measurements at three field sites, km 67, km 83, and Seca Floresta. The specific site for each set of measurements was not provided.

Column  Heading Units/format Description
1 Year YYYY Sampling date: year
2 Month MM Sampling date: month (1-12)
3 Day DD Sampling date: day ( 1-31)
4 Day_of _year day Sampling date as day of year (1-366)
5 Common_name Common name: gap refers to pioneer species found in a gap located approximately 50 m from the tower
6 Scientific_name Scientific name in the format Genus species or not provided
7 Family Scientific family or not provided
8 Leaf_ID Leaf ID number
9 Photo umol CO2 m-2 s-1 Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
10 Cond mol H2O m-2 s-1 Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
11 Ci umol CO2 mol air-1 Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
12 T_leaf degrees C Leaf temperature in degrees Celsius (degrees C)
13 Warm Leaf warmed (1=yes, 0=no)
Missing data values are represented as -9999


File 4: CD04_Photosynthesis_Warming_37_Santarem.csv

Leaf-level measurements at three field sites, km 67, km 83, and Seca Floresta. The specific site for each set of measurements was not provided.

Column Heading Units/format Description
1 Year YYYY Sampling date: year
2 Month MM Sampling date: month (1-12)
3 Day DD Sampling date: day ( 1-31)
4 Day_of _year day Sampling date as day of year (1-366)
5 Common_name Common name (gap refers to pioneer species found in a gap located approximately 50 m from the tower)
6 Scientific_name Scientific name in the format Genus species or "not provided"
7 Family Scientific family or "not provided"
8 Leaf_ID Leaf ID number
9 Photo_initial umol CO2 m-2 s-1 Initial photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
10 Photo_post umol m-2 s-1 Photosynthesis rate after 3-5 minutes of incubation reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
11 Delta_photo umol m-2 s-1 Difference between initial and post incubation photosynthesis rates
12 Cond_initial mol m-2 s-1 Initial stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
13 Cond_post mol m-2 s-1 Stomatal conductance after 3-5 minutes of incubation reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
14 Delta_cond mol m-2 s-1 Difference between initial and post incubation conductance rates
15 Ci_initial umol CO2 mol air-1 Initial intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
16 Ci_post umol CO2 mol air-1 Intercellular CO2 concentration after 3-5 minutes of incubation reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
17 T_leaf degrees C Leaf temperature in degrees Celsius (degrees C)
18 Warm Leaf warmed (1=yes, 0=no)
Missing data values are represented as -9999


File 5: CD04_Photorespiration_Warming_Santarem.csv

Leaf-level measurements at three field sites, km 67, km 83, and Seca Floresta. The specific site for each set of measurements was not provided.

Column Heading Units/format Description
1 Year YYYY Sampling date: year
2 Month MM Sampling date: month (1-12)
3 Day DD Sampling date: day ( 1-31)
4 Common_name Common name: gap refers to pioneer species found in a gap located approximately 50 m from the tower
5 Scientific_name Scientific name in the format Genus species or "not provided"
6 Family Scientific family or not provided
7 Leaf_ID Leaf ID number
8 Oxygen % Oxygen level (2% or ambient)
9 Photo umol CO2 m-2 s-1 Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
10 Cond mol H2O m-2 s-1 Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
11 Ci umol CO2 mol air-1 Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
12 T_leaf degrees C Leaf temperature in degrees Celsius (degrees C)
Missing data values are represented as -9999


File 6: CD04_Photosynthesis_Subcanopy_Lightcurves_Santarem.csv

Understory species leaf level measurements were made at two field sites, km 67 and km 83. Neither the specific site nor the specific date for sets of measurements were provided.

Column  Heading Units/format Description
1 Set Unique identifier given to each set of measurements
2 Obs Observation number within a set
3 Time HH:MM:SS Start time for measurement set in local time (GMT -4) on a 24 hour clock
4 Height m Canopy height from the ground measured in meters
5 Time seconds Seconds since start of measurement
6 Photo umol CO2 m-2 s-1 Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
7 Cond mol H2O m-2 s-1 Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
8 Ci umol CO2 mol air-1 Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
9 VpdL kPa Vapor pressure deficit of the leaf reported in kilopascals (kPa)
10 T_air degrees C Air temperature in the chamber in degrees Celsius (degrees C)
11 T_leaf degrees C Leaf temperature in degrees Celsius (degrees C)
12 C02_ref ppm Atmospheric CO2 concentration in the reference chamber reported in parts per million (ppm)
13 H20_ref mmol H2O mol air-1 Atmospheric water vapor concentration in the reference chamber reported in millimoles of water per mole of air (mmol H2O mol air-1)
14 RH_ref % Relative humidity in the reference chamber reported in percentage (%)
15 Flow umol s-1 Flow rate in chamber reported in micromoles of air per second (umol s-1)
16 PARi umol m-2 s-1 Photosynthetically active radiation (PAR) flux in the chamber reported as micromoles of photons per meter squared per second (umol m-2 s-1): all wavelengths between 400 and 700 nm included in this measurement
Missing data values are represented as -9999


File 7: CD04_Photosynthesis_Leaf_Age_Santarem.csv

Leaf-level measurements at three field sites, km 67, km 83, and Seca Floresta. The specific site for measurements was not provided.

Column Column Heading Units/format Description
1 Year YYYY Sampling date: year
2 Month MM Sampling date: month (1-12)
3 Day DD Sampling date: day ( 1-31)
4 Day_of _year day Sampling date as day of year (1-366)
5 Common_name Common name: gap refers to pioneer species found in a gap located approximately 50 m from the tower
6 Scientific_name Scientific name in the format Genus species
7 Family Scientific family
8 Leaf_ID Leaf number
9 Photo umol m-2 s-1 Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
10 Cond mol H2O m-2 s-1 Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
11 Ci umol CO2 mol air-1 Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
12 T_leaf degrees C Leaf temperature in degrees Celsius (degrees C)
13 Age_leaf years Approximate age of leaf in years
Missing data values are represented as -9999


Site boundaries: (All latitude and longitude given in decimal degrees)

Site (Region) Westernmost Longitude Easternmost Longitude Northernmost Latitude Southernmost Latitude Geodetic Datum
Para Western (Santarem) - km 83 Logged Forest Tower (Para Western (Santarem)) -54.9707 -54.9707 -3.017 -3.017 World Geodetic System, 1984 (WGS-84)
Para Western (Santarem) - km 67 Seca-Floresta Site (Para Western (Santarem)) -55.00000 -55.00000 -2.75000 -2.75000 World Geodetic System, 1984 (WGS-84)
Para Western (Santarem) - km 67 Primary Forest Tower Site (Para Western (Santarem)) -54.95900 -54.95900 -2.85700 -2.85700 World Geodetic System, 1984 (WGS-84)

代码

!pip install leafmap
!pip install pandas
!pip install folium
!pip install matplotlib
!pip install mapclassify
 
import pandas as pd
import leafmap
 
url = "https://github.com/opengeos/NASA-Earth-Data"
df = pd.read_csv(url, sep="\t")
df
 
leafmap.nasa_data_login()
 
 
results, gdf = leafmap.nasa_data_search(
    short_name="CD04_Leaf_Level_Gas_Exchange_1060",
    cloud_hosted=True,
    bounding_box=(-54.97, -3.02, -54.96, -2.75),
    temporal=("2000-06-01", "2006-02-28"),
    count=-1,  # use -1 to return all datasets
    return_gdf=True,
)
 
 
gdf.explore()
 
#leafmap.nasa_data_download(results[:5], out_dir="data")


引用

Doughty, C., Sousa, A, and Figueira, M. 2012. LBA-ECO CD-04 Leaf Photosynthesis and Respiration, Tapajos National Forest: 2000-2006. Available on-line [http://daac.ornl.gov] from Oak Ridge National Laboratory Distributed Active Archive Center, Oak Ridge, Tennessee, U.S.A.

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